PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04654.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 87aa    MW: 9079.19 Da    PI: 7.9193
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04654.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.52.1e-132650327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                             ++ C +++rtG+C yG+rC+F+H++
  Rsa1.0_04654.1_g00002.1 26 EPDCIYYLRTGICGYGSRCRFNHPR 50
                             689********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.8E-62350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0612351IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-112650IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-72751IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-62950IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MWRLGLSGGG AGGGGGGEAY PERSNEPDCI YYLRTGICGY GSRCRFNHPR DRGAVVGGVR  60
GGVGEDGALP DRMGQPICQV LYTLSLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892335e-48AC189233.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407949.12e-33hypothetical protein EUTSA_v10020686mg
SwissprotQ9SQU42e-33C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLV4M3D62e-33V4M3D6_EUTSA; Uncharacterized protein
STRINGAT3G06410.15e-31(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2579233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.18e-22C3H family protein